PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s01200.2
Common NameLR48_Vigan06g129600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family RAV
Protein Properties Length: 275aa    MW: 30049.2 Da    PI: 9.9037
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s01200.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.8e-123072149
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                      s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a
  Vang0005s01200.2 30 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIA 72
                      89****9888.8*********3.....5**********99*******87 PP

2B399.91.5e-3191195196
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h         +   ++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++
  Vang0005s01200.2  91 FEKAVTPSDVGKLNRLVIPKQHAEKHfplhsangvSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHR 183
                       89****************************998886667799**************************************************8 PP

                       -SSSEE..EEEE CS
                B3  85 dgrsefelvvkv 96 
                       +   +++l++ +
  Vang0005s01200.2 184 STGPDKQLYIDW 195
                       766777777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-183072No hitNo description
SuperFamilySSF541714.18E-123072IPR016177DNA-binding domain
PfamPF008472.8E-73071IPR001471AP2/ERF domain
SMARTSM003804.4E-133190IPR001471AP2/ERF domain
PROSITE profilePS5103215.5013172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-143172IPR001471AP2/ERF domain
PRINTSPR003677.2E-53243IPR001471AP2/ERF domain
PRINTSPR003677.2E-55268IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-4086200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-3089194IPR015300DNA-binding pseudobarrel domain
CDDcd100179.51E-2990184No hitNo description
PROSITE profilePS5086313.50791199IPR003340B3 DNA binding domain
SMARTSM010193.5E-2591199IPR003340B3 DNA binding domain
PfamPF023621.3E-2891196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
LCRVGSGASA IVDPDGGGNT EVESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN  60
EEDEAARAYD IAGNGNSIAG ACFVKAREQL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLH  120
SANGVSATAA KGVLLNFEDV AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLKAGDTVC  180
FHRSTGPDKQ LYIDWKARNN NVNEVGLFGP VGPVVEPIQM VRLFGVNILK LPGSEPNGNN  240
NASGTIPGFC NGKRREMELF SLECSKKPKI IGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-588819911118DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521390.11e-143PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9LS063e-78RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A0S3T2B31e-143A0A0S3T2B3_PHAAN; Uncharacterized protein
TrEMBLA0A0L9UT171e-143A0A0L9UT17_PHAAN; Uncharacterized protein
STRINGGLYMA02G11060.11e-119(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.12e-79ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]